Antenna Season Report Notebook¶

Josh Dillon, Last Revised January 2022

This notebook examines an individual antenna's performance over a whole season. This notebook parses information from each nightly rtp_summarynotebook (as saved to .csvs) and builds a table describing antenna performance. It also reproduces per-antenna plots from each auto_metrics notebook pertinent to the specific antenna.

In [1]:
import os
from IPython.display import display, HTML
display(HTML("<style>.container { width:100% !important; }</style>"))
In [2]:
# If you want to run this notebook locally, copy the output of the next cell into the next line of this cell.
# antenna = "004"
# csv_folder = '/lustre/aoc/projects/hera/H5C/H5C_Notebooks/_rtp_summary_'
# auto_metrics_folder = '/lustre/aoc/projects/hera/H5C/H5C_Notebooks/auto_metrics_inspect'
# os.environ["ANTENNA"] = antenna
# os.environ["CSV_FOLDER"] = csv_folder
# os.environ["AUTO_METRICS_FOLDER"] = auto_metrics_folder
In [3]:
# Use environment variables to figure out path to the csvs and auto_metrics
antenna = str(int(os.environ["ANTENNA"]))
csv_folder = os.environ["CSV_FOLDER"]
auto_metrics_folder = os.environ["AUTO_METRICS_FOLDER"]
print(f'antenna = "{antenna}"')
print(f'csv_folder = "{csv_folder}"')
print(f'auto_metrics_folder = "{auto_metrics_folder}"')
antenna = "96"
csv_folder = "/home/obs/src/H6C_Notebooks/_rtp_summary_"
auto_metrics_folder = "/home/obs/src/H6C_Notebooks/auto_metrics_inspect"
In [4]:
display(HTML(f'<h1 style=font-size:50px><u>Antenna {antenna} Report</u><p></p></h1>'))

Antenna 96 Report

In [5]:
import numpy as np
import pandas as pd
pd.set_option('display.max_rows', 1000)
import glob
import re
from hera_notebook_templates.utils import status_colors, Antenna
In [6]:
# load csvs and auto_metrics htmls in reverse chronological order
csvs = sorted(glob.glob(os.path.join(csv_folder, 'rtp_summary_table*.csv')))[::-1]
print(f'Found {len(csvs)} csvs in {csv_folder}')
auto_metric_htmls = sorted(glob.glob(auto_metrics_folder + '/auto_metrics_inspect_*.html'))[::-1]
print(f'Found {len(auto_metric_htmls)} auto_metrics notebooks in {auto_metrics_folder}')
Found 14 csvs in /home/obs/src/H6C_Notebooks/_rtp_summary_
Found 14 auto_metrics notebooks in /home/obs/src/H6C_Notebooks/auto_metrics_inspect
In [7]:
# Per-season options
mean_round_modz_cut = 4
dead_cut = 0.4
crossed_cut = 0.0

def jd_to_summary_url(jd):
    return f'https://htmlpreview.github.io/?https://github.com/HERA-Team/H6C_Notebooks/blob/main/_rtp_summary_/rtp_summary_{jd}.html'

def jd_to_auto_metrics_url(jd):
    return f'https://htmlpreview.github.io/?https://github.com/HERA-Team/H6C_Notebooks/blob/main/auto_metrics_inspect/auto_metrics_inspect_{jd}.html'

Load relevant info from summary CSVs¶

In [8]:
this_antenna = None
jds = []

# parse information about antennas and nodes
for csv in csvs:
    df = pd.read_csv(csv)
    for n in range(len(df)):
        # Add this day to the antenna
        row = df.loc[n]
        if isinstance(row['Ant'], str) and '<a href' in row['Ant']:
            antnum = int(row['Ant'].split('</a>')[0].split('>')[-1]) # it's a link, extract antnum
        else:
            antnum = int(row['Ant'])
        if antnum != int(antenna):
            continue
        
        if np.issubdtype(type(row['Node']), np.integer):
            row['Node'] = str(row['Node'])
        if type(row['Node']) == str and row['Node'].isnumeric():
            row['Node'] = 'N' + ('0' if len(row['Node']) == 1 else '') + row['Node']
            
        if this_antenna is None:
            this_antenna = Antenna(row['Ant'], row['Node'])
        jd = [int(s) for s in re.split('_|\.', csv) if s.isdigit()][-1]
        jds.append(jd)
        this_antenna.add_day(jd, row)
        break
In [9]:
# build dataframe
to_show = {'JDs': [f'<a href="{jd_to_summary_url(jd)}" target="_blank">{jd}</a>' for jd in jds]}
to_show['A Priori Status'] = [this_antenna.statuses[jd] for jd in jds]

df = pd.DataFrame(to_show)

# create bar chart columns for flagging percentages:
bar_cols = {}
bar_cols['Auto Metrics Flags'] = [this_antenna.auto_flags[jd] for jd in jds]
bar_cols[f'Dead Fraction in Ant Metrics (Jee)'] = [this_antenna.dead_flags_Jee[jd] for jd in jds]
bar_cols[f'Dead Fraction in Ant Metrics (Jnn)'] = [this_antenna.dead_flags_Jnn[jd] for jd in jds]
bar_cols['Crossed Fraction in Ant Metrics'] = [this_antenna.crossed_flags[jd] for jd in jds]
bar_cols['Flag Fraction Before Redcal'] = [this_antenna.flags_before_redcal[jd] for jd in jds]
bar_cols['Flagged By Redcal chi^2 Fraction'] = [this_antenna.redcal_flags[jd] for jd in jds]
for col in bar_cols:
    df[col] = bar_cols[col]

z_score_cols = {}
z_score_cols['ee Shape Modified Z-Score'] = [this_antenna.ee_shape_zs[jd] for jd in jds]
z_score_cols['nn Shape Modified Z-Score'] = [this_antenna.nn_shape_zs[jd] for jd in jds]
z_score_cols['ee Power Modified Z-Score'] = [this_antenna.ee_power_zs[jd] for jd in jds]
z_score_cols['nn Power Modified Z-Score'] = [this_antenna.nn_power_zs[jd] for jd in jds]
z_score_cols['ee Temporal Variability Modified Z-Score'] = [this_antenna.ee_temp_var_zs[jd] for jd in jds]
z_score_cols['nn Temporal Variability Modified Z-Score'] = [this_antenna.nn_temp_var_zs[jd] for jd in jds]
z_score_cols['ee Temporal Discontinuties Modified Z-Score'] = [this_antenna.ee_temp_discon_zs[jd] for jd in jds]
z_score_cols['nn Temporal Discontinuties Modified Z-Score'] = [this_antenna.nn_temp_discon_zs[jd] for jd in jds]
for col in z_score_cols:
    df[col] = z_score_cols[col]

ant_metrics_cols = {}
ant_metrics_cols['Average Dead Ant Metric (Jee)'] = [this_antenna.Jee_dead_metrics[jd] for jd in jds]
ant_metrics_cols['Average Dead Ant Metric (Jnn)'] = [this_antenna.Jnn_dead_metrics[jd] for jd in jds]
ant_metrics_cols['Average Crossed Ant Metric'] = [this_antenna.crossed_metrics[jd] for jd in jds]
for col in ant_metrics_cols:
    df[col] = ant_metrics_cols[col]

redcal_cols = {}
redcal_cols['Median chi^2 Per Antenna (Jee)'] = [this_antenna.Jee_chisqs[jd] for jd in jds]
redcal_cols['Median chi^2 Per Antenna (Jnn)'] = [this_antenna.Jnn_chisqs[jd] for jd in jds]   
for col in redcal_cols:
    df[col] = redcal_cols[col]

# style dataframe
table = df.style.hide_index()\
          .applymap(lambda val: f'background-color: {status_colors[val]}' if val in status_colors else '', subset=['A Priori Status']) \
          .background_gradient(cmap='viridis', vmax=mean_round_modz_cut * 3, vmin=0, axis=None, subset=list(z_score_cols.keys())) \
          .background_gradient(cmap='bwr_r', vmin=dead_cut-.25, vmax=dead_cut+.25, axis=0, subset=list([col for col in ant_metrics_cols if 'dead' in col.lower()])) \
          .background_gradient(cmap='bwr_r', vmin=crossed_cut-.25, vmax=crossed_cut+.25, axis=0, subset=list([col for col in ant_metrics_cols if 'crossed' in col.lower()])) \
          .background_gradient(cmap='plasma', vmax=4, vmin=1, axis=None, subset=list(redcal_cols.keys())) \
          .applymap(lambda val: 'font-weight: bold' if val < dead_cut else '', subset=list([col for col in ant_metrics_cols if 'dead' in col.lower()])) \
          .applymap(lambda val: 'font-weight: bold' if val < crossed_cut else '', subset=list([col for col in ant_metrics_cols if 'crossed' in col.lower()])) \
          .applymap(lambda val: 'font-weight: bold' if val > mean_round_modz_cut else '', subset=list(z_score_cols.keys())) \
          .applymap(lambda val: 'color: red' if val > mean_round_modz_cut else '', subset=list(z_score_cols.keys())) \
          .bar(subset=list(bar_cols.keys()), vmin=0, vmax=1) \
          .format({col: '{:,.4f}'.format for col in z_score_cols}) \
          .format({col: '{:,.4f}'.format for col in ant_metrics_cols}) \
          .format('{:,.2%}', na_rep='-', subset=list(bar_cols.keys())) \
          .set_table_styles([dict(selector="th",props=[('max-width', f'70pt')])]) 

Table 1: Per-Night RTP Summary Info For This Atenna¶

This table reproduces each night's row for this antenna from the RTP Summary notebooks. For more info on the columns, see those notebooks, linked in the JD column.

In [10]:
display(HTML(f'<h2>Antenna {antenna}, Node {this_antenna.node}:</h2>'))
HTML(table.render(render_links=True, escape=False))

Antenna 96, Node N11:

Out[10]:
JDs A Priori Status Auto Metrics Flags Dead Fraction in Ant Metrics (Jee) Dead Fraction in Ant Metrics (Jnn) Crossed Fraction in Ant Metrics Flag Fraction Before Redcal Flagged By Redcal chi^2 Fraction ee Shape Modified Z-Score nn Shape Modified Z-Score ee Power Modified Z-Score nn Power Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Discontinuties Modified Z-Score nn Temporal Discontinuties Modified Z-Score Average Dead Ant Metric (Jee) Average Dead Ant Metric (Jnn) Average Crossed Ant Metric Median chi^2 Per Antenna (Jee) Median chi^2 Per Antenna (Jnn)
2459989 not_connected 100.00% 0.00% 0.00% 0.00% - - 4.638033 21.733882 3.590674 1.522982 3.215096 1.973578 -2.386404 -1.762020 0.5925 0.4932 0.3646 nan nan
2459988 not_connected 100.00% 0.00% 0.00% 0.00% - - 5.382239 24.747399 3.888099 1.870198 4.420959 3.923584 -2.388506 -1.377784 0.5933 0.4989 0.3581 nan nan
2459987 not_connected 100.00% 0.00% 0.00% 0.00% - - 4.401063 19.522256 3.549614 1.509646 2.627410 2.050454 -3.349587 -1.881287 0.6014 0.5083 0.3545 nan nan
2459986 not_connected 100.00% 0.00% 0.00% 0.00% - - 5.555384 23.521306 3.897869 1.831522 4.122794 3.644248 1.129553 2.056870 0.6177 0.5398 0.3159 nan nan
2459985 not_connected 100.00% 0.00% 0.00% 0.00% - - 5.003667 21.339326 3.462352 1.545643 3.173141 2.284380 -3.860962 -2.606521 0.6013 0.5083 0.3574 nan nan
2459984 not_connected 100.00% 0.00% 0.00% 0.00% - - 4.713998 18.014385 3.547655 1.694252 4.928443 4.766650 -1.012766 -0.578888 0.6121 0.5356 0.3394 nan nan
2459983 not_connected 100.00% 0.00% 0.00% 93.19% - - 24.634930 2.738422 0.811018 2.854558 2.564138 5.035964 3.381826 1.822341 0.3442 0.3291 -0.2282 nan nan
2459982 not_connected 100.00% 0.00% 0.00% 92.06% - - 19.362156 0.471413 0.088278 1.856787 0.832692 1.083527 0.341042 1.022942 0.3861 0.3637 -0.2148 nan nan
2459981 not_connected 100.00% 0.00% 0.00% 100.00% - - 24.275696 2.610225 0.968993 3.372681 10.647848 10.472751 1.145069 -1.335205 0.2491 0.2212 -0.2621 nan nan
2459980 not_connected 100.00% 0.00% 0.00% 97.73% - - 10.418021 5.594051 3.083562 4.238692 4.263200 8.653397 2.283369 3.990349 0.3381 0.2950 -0.2212 nan nan
2459979 not_connected 100.00% 0.00% 0.00% 100.00% - - 11.826610 6.286600 3.090504 4.239420 3.827698 7.941063 -1.688729 -3.426442 0.2494 0.2109 -0.2539 nan nan
2459978 not_connected 100.00% 0.00% 0.00% 100.00% - - 12.268894 6.516440 3.421427 4.750043 3.885474 8.777623 -2.368223 -4.044642 0.2423 0.1993 -0.2563 nan nan
2459977 not_connected 100.00% 0.00% 0.00% 100.00% - - 10.810812 6.405774 2.989011 4.058133 4.577110 9.378942 -2.713903 -3.875131 0.2498 0.2083 -0.2349 nan nan
2459976 not_connected 100.00% 0.00% 0.00% 100.00% - - 11.802273 6.396478 3.326196 4.670810 3.584395 8.475789 -1.221134 -2.395465 0.2599 0.2129 -0.2532 nan nan

Load antenna metric spectra and waterfalls from auto_metrics notebooks.¶

In [11]:
htmls_to_display = []
for am_html in auto_metric_htmls:
    html_to_display = ''
    # read html into a list of lines
    with open(am_html) as f:
        lines = f.readlines()
    
    # find section with this antenna's metric plots and add to html_to_display
    jd = [int(s) for s in re.split('_|\.', am_html) if s.isdigit()][-1]
    try:
        section_start_line = lines.index(f'<h2>Antenna {antenna}: {jd}</h2>\n')
    except ValueError:
        continue
    html_to_display += lines[section_start_line].replace(str(jd), f'<a href="{jd_to_auto_metrics_url(jd)}" target="_blank">{jd}</a>')
    for line in lines[section_start_line + 1:]:
        html_to_display += line
        if '<hr' in line:
            htmls_to_display.append(html_to_display)
            break

Figure 1: Antenna autocorrelation metric spectra and waterfalls.¶

These figures are reproduced from auto_metrics notebooks. For more info on the specific plots and metrics, see those notebooks (linked at the JD). The most recent 100 days (at most) are shown.

In [12]:
for i, html_to_display in enumerate(htmls_to_display):
    if i == 100:
        break
    display(HTML(html_to_display))

Antenna 96: 2459989

Ant Node A Priori Status Worst Metric Worst Modified Z-Score nn Shape Modified Z-Score ee Shape Modified Z-Score nn Power Modified Z-Score ee Power Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Discontinuties Modified Z-Score ee Temporal Discontinuties Modified Z-Score
96 N11 not_connected nn Shape 21.733882 21.733882 4.638033 1.522982 3.590674 1.973578 3.215096 -1.762020 -2.386404

Antenna 96: 2459988

Ant Node A Priori Status Worst Metric Worst Modified Z-Score nn Shape Modified Z-Score ee Shape Modified Z-Score nn Power Modified Z-Score ee Power Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Discontinuties Modified Z-Score ee Temporal Discontinuties Modified Z-Score
96 N11 not_connected nn Shape 24.747399 24.747399 5.382239 1.870198 3.888099 3.923584 4.420959 -1.377784 -2.388506

Antenna 96: 2459987

Ant Node A Priori Status Worst Metric Worst Modified Z-Score ee Shape Modified Z-Score nn Shape Modified Z-Score ee Power Modified Z-Score nn Power Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Discontinuties Modified Z-Score nn Temporal Discontinuties Modified Z-Score
96 N11 not_connected nn Shape 19.522256 4.401063 19.522256 3.549614 1.509646 2.627410 2.050454 -3.349587 -1.881287

Antenna 96: 2459986

Ant Node A Priori Status Worst Metric Worst Modified Z-Score nn Shape Modified Z-Score ee Shape Modified Z-Score nn Power Modified Z-Score ee Power Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Discontinuties Modified Z-Score ee Temporal Discontinuties Modified Z-Score
96 N11 not_connected nn Shape 23.521306 23.521306 5.555384 1.831522 3.897869 3.644248 4.122794 2.056870 1.129553

Antenna 96: 2459985

Ant Node A Priori Status Worst Metric Worst Modified Z-Score nn Shape Modified Z-Score ee Shape Modified Z-Score nn Power Modified Z-Score ee Power Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Discontinuties Modified Z-Score ee Temporal Discontinuties Modified Z-Score
96 N11 not_connected nn Shape 21.339326 21.339326 5.003667 1.545643 3.462352 2.284380 3.173141 -2.606521 -3.860962

Antenna 96: 2459984

Ant Node A Priori Status Worst Metric Worst Modified Z-Score ee Shape Modified Z-Score nn Shape Modified Z-Score ee Power Modified Z-Score nn Power Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Discontinuties Modified Z-Score nn Temporal Discontinuties Modified Z-Score
96 N11 not_connected nn Shape 18.014385 4.713998 18.014385 3.547655 1.694252 4.928443 4.766650 -1.012766 -0.578888

Antenna 96: 2459983

Ant Node A Priori Status Worst Metric Worst Modified Z-Score ee Shape Modified Z-Score nn Shape Modified Z-Score ee Power Modified Z-Score nn Power Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Discontinuties Modified Z-Score nn Temporal Discontinuties Modified Z-Score
96 N11 not_connected ee Shape 24.634930 24.634930 2.738422 0.811018 2.854558 2.564138 5.035964 3.381826 1.822341

Antenna 96: 2459982

Ant Node A Priori Status Worst Metric Worst Modified Z-Score ee Shape Modified Z-Score nn Shape Modified Z-Score ee Power Modified Z-Score nn Power Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Discontinuties Modified Z-Score nn Temporal Discontinuties Modified Z-Score
96 N11 not_connected ee Shape 19.362156 19.362156 0.471413 0.088278 1.856787 0.832692 1.083527 0.341042 1.022942

Antenna 96: 2459981

Ant Node A Priori Status Worst Metric Worst Modified Z-Score nn Shape Modified Z-Score ee Shape Modified Z-Score nn Power Modified Z-Score ee Power Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Discontinuties Modified Z-Score ee Temporal Discontinuties Modified Z-Score
96 N11 not_connected ee Shape 24.275696 2.610225 24.275696 3.372681 0.968993 10.472751 10.647848 -1.335205 1.145069

Antenna 96: 2459980

Ant Node A Priori Status Worst Metric Worst Modified Z-Score nn Shape Modified Z-Score ee Shape Modified Z-Score nn Power Modified Z-Score ee Power Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Discontinuties Modified Z-Score ee Temporal Discontinuties Modified Z-Score
96 N11 not_connected ee Shape 10.418021 5.594051 10.418021 4.238692 3.083562 8.653397 4.263200 3.990349 2.283369

Antenna 96: 2459979

Ant Node A Priori Status Worst Metric Worst Modified Z-Score ee Shape Modified Z-Score nn Shape Modified Z-Score ee Power Modified Z-Score nn Power Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Discontinuties Modified Z-Score nn Temporal Discontinuties Modified Z-Score
96 N11 not_connected ee Shape 11.826610 11.826610 6.286600 3.090504 4.239420 3.827698 7.941063 -1.688729 -3.426442

Antenna 96: 2459978

Ant Node A Priori Status Worst Metric Worst Modified Z-Score nn Shape Modified Z-Score ee Shape Modified Z-Score nn Power Modified Z-Score ee Power Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Discontinuties Modified Z-Score ee Temporal Discontinuties Modified Z-Score
96 N11 not_connected ee Shape 12.268894 6.516440 12.268894 4.750043 3.421427 8.777623 3.885474 -4.044642 -2.368223

Antenna 96: 2459977

Ant Node A Priori Status Worst Metric Worst Modified Z-Score ee Shape Modified Z-Score nn Shape Modified Z-Score ee Power Modified Z-Score nn Power Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Discontinuties Modified Z-Score nn Temporal Discontinuties Modified Z-Score
96 N11 not_connected ee Shape 10.810812 10.810812 6.405774 2.989011 4.058133 4.577110 9.378942 -2.713903 -3.875131

Antenna 96: 2459976

Ant Node A Priori Status Worst Metric Worst Modified Z-Score nn Shape Modified Z-Score ee Shape Modified Z-Score nn Power Modified Z-Score ee Power Modified Z-Score nn Temporal Variability Modified Z-Score ee Temporal Variability Modified Z-Score nn Temporal Discontinuties Modified Z-Score ee Temporal Discontinuties Modified Z-Score
96 N11 not_connected ee Shape 11.802273 6.396478 11.802273 4.670810 3.326196 8.475789 3.584395 -2.395465 -1.221134

In [ ]: